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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 21-40 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q8IVF6ANKRD18AAnkyrin repeat domain-containing protein 18AChromosome-9Ankyrin repeat domain-containing protein 18A
Q8NH93OR1L3Olfactory receptor 1L3Chromosome-9Olfactory receptor 1L3
P0CG42FAM157BPutative protein FAM157BChromosome-9Putative protein FAM157B
Q5T8R8C9orf66Uncharacterized protein C9orf66Chromosome-9Uncharacterized protein C9orf66
Q6VB84FOXD4L3Forkhead box protein D4-like 3Chromosome-9Forkhead box protein D4-like 3
Q6UXD1HRCT1Histidine-rich carboxyl terminus protein 1Chromosome-9Histidine-rich carboxyl terminus protein 1
Q6JVE9LCN8Epididymal-specific lipocalin-8Chromosome-9Epididymal-specific lipocalin-8
Q6JVE5LCN12Epididymal-specific lipocalin-12Chromosome-9Epididymal-specific lipocalin-12
P04808RLN1Prorelaxin H1Chromosome-9Prorelaxin H1
Q6TFL3CCDC171Coiled-coil domain-containing protein 171Chromosome-9Coiled-coil domain-containing protein 171
Q9BZE3BARHL1BarH-like 1 homeobox proteinChromosome-9BarH-like 1 homeobox protein
Q5TYW1ZNF658Zinc finger protein 658Chromosome-9Zinc finger protein 658
Q8N7X2C9orf173Uncharacterized protein C9orf173Chromosome-9Uncharacterized protein C9orf173
Q8N6L7TMEM252Transmembrane protein 252Chromosome-9Transmembrane protein 252
Q5TYW2ANKRD20A1Ankyrin repeat domain-containing protein 20A1Chromosome-9Ankyrin repeat domain-containing protein 20A1
Q99679GPR21Probable G-protein coupled receptor 21Chromosome-9Probable G-protein coupled receptor 21
Q5T953IER5LImmediate early response gene 5-like proteinChromosome-9Immediate early response gene 5-like protein
Q8N5D6GBGT1Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1Chromosome-9Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Q5VXU9C9orf84Uncharacterized protein C9orf84Chromosome-9Uncharacterized protein C9orf84

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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