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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 41-60 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q12950FOXD4Forkhead box protein D4Chromosome-9Forkhead box protein D4
Q5VZ03NXNL2Nucleoredoxin-like protein 2Chromosome-9Nucleoredoxin-like protein 2
Q8NGT1OR2K2Olfactory receptor 2K2Chromosome-9Olfactory receptor 2K2
A6NI61TMEM8CProtein myomakerChromosome-9Protein myomaker
Q9Y6X6MYO16Unconventional myosin-XVIChromosome-13Unconventional myosin-XVI
Q8IW03SIAH3Seven in absentia homolog 3Chromosome-13Seven in absentia homolog 3
Q86UB2BIVMBasic immunoglobulin-like variable motif-containing proteinChromosome-13Basic immunoglobulin-like variable motif-containing protein
A0PJE2DHRS12Dehydrogenase/reductase SDR family member 12Chromosome-13Dehydrogenase/reductase SDR family member 12
Q86Y27BAGE5B melanoma antigen 5Chromosome-13B melanoma antigen 5
Q96KW9SPACA7Protein SPACA7Chromosome-13Protein SPACA7
Q8TAV4STOML3Stomatin-like protein 3Chromosome-13Stomatin-like protein 3
Q13072BAGEB melanoma antigen 1Chromosome-13B melanoma antigen 1
O43193MLNRMotilin receptorChromosome-13Motilin receptor
A6NP61ZAR1LZAR1-like proteinChromosome-13ZAR1-like protein
Q5T0U0CCDC122Coiled-coil domain-containing protein 122Chromosome-13Coiled-coil domain-containing protein 122
Q6P3R8NEK5Serine/threonine-protein kinase Nek5Chromosome-13Serine/threonine-protein kinase Nek5
Q01851POU4F1POU domain, class 4, transcription factor 1Chromosome-13POU domain, class 4, transcription factor 1
A2A2V5SERTM1Serine-rich and transmembrane domain-containing protein 1Chromosome-13Serine-rich and transmembrane domain-containing protein 1
Q9NR64KLHL1Kelch-like protein 1Chromosome-13Kelch-like protein 1
O75343GUCY1B2Guanylate cyclase soluble subunit beta-2Chromosome-13Guanylate cyclase soluble subunit beta-2

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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