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The MissingProteinPedia is a protein data and information sharing web system that aims to collate any relevant data ‘Missing proteins’ as defined by neXtProt. At its core is a schema-less database-driven web system allowing captures of all PE2-4 protein PubMed data, based on gene and protein including synonyms. The database also allows unpublished, preliminary or proprietary data (e.g., antibody, MS, cell biological and genetic studies) to be shared with collaborators via a protected interface.

MissingProteinPedia facilitates the Human Proteome Project (HPP) cross-disciplinary collaboration by providing a complimentary, unfiltered, lower stringency perspective to both the HPP metrics and guidelines approaches, enabling community evaluation and scrutiny. MissingProteinPedia incorporates text mining technology to fetch and search accumulated UniProt, GeneCards, GeneRifs, PubMed PE2-4 data. Besides, MissingProteinPedia summarizes publicly available MS data from PRIDE, GPMDB, ProteomicsDB and MaxQB for relevant PE2-4 proteins. It allows community administrators to curate information before web publication.

We encourage all visitors to browse and contribute to 'finding' these proteins by sharing any relevant information on them that we may have missed!


Showing 101-120 of 1,482 items.
Protein IDGene IDProtein NameChromosome IDGene NameTag(s) 
Q53FE4C4orf17Uncharacterized protein C4orf17Chromosome-4Uncharacterized protein C4orf17
Q8N1C3GABRG1Gamma-aminobutyric acid receptor subunit gamma-1Chromosome-4Gamma-aminobutyric acid receptor subunit gamma-1
O75310UGT2B11UDP-glucuronosyltransferase 2B11Chromosome-4UDP-glucuronosyltransferase 2B11
Q96P65QRFPRPyroglutamylated RFamide peptide receptorChromosome-4Pyroglutamylated RFamide peptide receptor
Q8N609TRAM1L1Translocating chain-associated membrane protein 1-like 1Chromosome-4Translocating chain-associated membrane protein 1-like 1
Q92858ATOH1Protein atonal homolog 1Chromosome-4Protein atonal homolog 1
P0C091FREM3FRAS1-related extracellular matrix protein 3Chromosome-4FRAS1-related extracellular matrix protein 3
Q8NE18NSUN7Putative methyltransferase NSUN7Chromosome-4Putative methyltransferase NSUN7
A6NFD8HELTHairy and enhancer of split-related protein HELTChromosome-4Hairy and enhancer of split-related protein HELT
Q15761NPY5RNeuropeptide Y receptor type 5Chromosome-4Neuropeptide Y receptor type 5
Q4ZJI4SLC9B1Sodium/hydrogen exchanger 9B1Chromosome-4Sodium/hydrogen exchanger 9B1
Q49A17GALNTL6Polypeptide N-acetylgalactosaminyltransferase-like 6Chromosome-4Polypeptide N-acetylgalactosaminyltransferase-like 6
Q9NRD0FBXO8F-box only protein 8Chromosome-4F-box only protein 8
Q8TF08COX7B2Cytochrome c oxidase subunit 7B2, mitochondrialChromosome-4Cytochrome c oxidase subunit 7B2, mitochondrial
Q6ZU67BEND4BEN domain-containing protein 4Chromosome-4BEN domain-containing protein 4
Q6T311ARL9ADP-ribosylation factor-like protein 9Chromosome-4ADP-ribosylation factor-like protein 9
Q6ZMT9DTHD1Death domain-containing protein 1Chromosome-4Death domain-containing protein 1
Q15825CHRNA6Neuronal acetylcholine receptor subunit alpha-6Chromosome-8Neuronal acetylcholine receptor subunit alpha-6

Related Publications

Publications to be cited for using MPP data and services

Islam, M.T. et al. Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the “Missing” Human Proteome. Journal of Proteome Research 13 (1), 76-83, doi: 10.1021/pr400794x (2014)
Islam, M.T. et al. A systematic bioinformatics approach to identify high quality MS data and functionally annotate proteins and proteomes. Methods Mol. Biol.1549, 163–176, doi: 10.1007/978-1-4939-6740-7_13 (2016)
Baker, M. S. et al. Accelerating the search for the missing proteins in the human proteome. Nat. Commun. 8, 14271 doi: 10.1038/ncomms14271 (2017).
Islam, M.T. et al. Missing ProteinPedia - under preparation.


Professor Mark S. Baker

  •  Department of Biomedical Sciences,

           Faculty of Medicine and Health Sciences,

           Level 1, 75 Talavera Rd, Macquarie University, NSW 2109, Australia

Bioinformatics, Database and Web Administration

Professor Shoba Ranganathan

  •  Department of Biomedical Sciences,

           Department of Chemistry and Biomolecular Science,

           Building F7B Room 121, Macquarie University, NSW 2109, Australia

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